cMapper: gene-centric connectivity mapper for EBI-RDF platform
نویسندگان
چکیده
منابع مشابه
Updates from the EMBL-EBI RDF platform
The EBI RDF platform[1] was released in 2013 and provides access to several EBI databases as RDF Linked Data. The RDF platform provides a SPARQL endpoints and a Linked Data browser to the data in addition to making data dumps available over FTP. At release the RDF platform contained data from the Reactome, BioModels, BioSamples, Gene Expression Atlas and ChEMBL databases in addition to the coll...
متن کاملCentric connectivity index by shell matrices
Relative centricity RC values of vertices/atoms are calculated within the Distance Detour and Cluj-Distance criteria on their corresponding Shell transforms. The vertex RC distribution in a molecular graph gives atom equivalence classes, useful in interpretation of NMR spectra. Timed by vertex valences, RC provides a new index, called Centric Connectivity CC, which can be useful in the topologi...
متن کاملThe EBI RDF platform: linked open data for the life sciences
MOTIVATION Resource description framework (RDF) is an emerging technology for describing, publishing and linking life science data. As a major provider of bioinformatics data and services, the European Bioinformatics Institute (EBI) is committed to making data readily accessible to the community in ways that meet existing demand. The EBI RDF platform has been developed to meet an increasing dem...
متن کاملData-Centric Schema Creation for RDF
Very recently, the vision of the Semantic Web has brought about new challenges in data management. One fundamental research issue in this arena is storage of the Resource Description Framework (RDF): the data model at the core of the Semantic Web. In this paper, we study a data-centric approach for storage of RDF in relational databases. The intuition behind our approach is that each RDF datase...
متن کاملNode-centric RDF Graph Visualization
RDF, visualization, Resource Description Framework, graph, browser, nodecentric This paper describes a node-centric technique for visualizing Resource Description Framework (RDF) graphs. Nodes of interest are discovered by searching over literals. Subgraphs for display are constructed by using the area around selected nodes. Wider views are created by sorting and displaying nodes based on the n...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Bioinformatics
سال: 2016
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btw612